Browsing by Author "Dave, Kashyap"

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    Contribution of allelic imbalance to colorectal cancer
    (2018-09-10) Palin, Kimmo; Pitkänen, Esa; Turunen, Mikko; Sahu, Biswajyoti; Pihlajamaa, Päivi; Kivioja, Teemu; Kaasinen, Eevi; Välimäki, Niko; Hänninen, Ulrika; Cajuso, Tatiana; Aavikko, Mervi; Tuupanen, Sari; Kilpivaara, Outi; van den Berg, Linda; Kondelin, Johanna; Tanskanen, Tomas; Katainen, Riku; Grau, Marta; Rauanheimo, Heli; Plaketti, Roosa-Maria; Taira, Aurora; Sulo, Päivi; Hartonen, Tuomo; Dave, Kashyap; Schmierer, Bernhard; Botla, Sandeep; Sokolova, Maria; Vähärautio, Anna; Gladysz, Kornelia; Ongen, Halit; Dermitzakis, Emmanouil; Bramsen, Jesper; Ørntoft, Torben; Lindbjerg Andersen, Claus; Ristimäki, Ari; Lepistö, Anna; Renkonen-Sinisalo, Laura; Mecklin, Jukka-Pekka; Taipale, Jussi; Aaltonen, Lauri; University of Helsinki - Palin, Kimmo; University of Helsinki - Pitkänen, Esa; University of Helsinki - Turunen, Mikko; University of Helsinki - Sahu, Biswajyoti; University of Helsinki - Pihlajamaa, Päivi; University of Helsinki - Kivioja, Teemu; Karolinska Institute - Kaasinen, Eevi; University of Helsinki - Välimäki, Niko; University of Helsinki - Hänninen, Ulrika; University of Helsinki - Cajuso, Tatiana; University of Helsinki - Aavikko, Mervi; University of Helsinki - Tuupanen, Sari; University of Helsinki - Kilpivaara, Outi; University of Helsinki - van den Berg, Linda; University of Helsinki - Kondelin, Johanna; University of Helsinki - Tanskanen, Tomas; University of Helsinki - Katainen, Riku; University of Helsinki - Grau, Marta; University of Helsinki - Rauanheimo, Heli; University of Helsinki - Plaketti, Roosa-Maria; University of Helsinki - Taira, Aurora; University of Helsinki - Sulo, Päivi; University of Helsinki - Hartonen, Tuomo; Karolinska Institute - Dave, Kashyap; Karolinska Institute - Schmierer, Bernhard; Karolinska Institute - Botla, Sandeep; University of Helsinki - Sokolova, Maria; University of Helsinki - Vähärautio, Anna; University of Helsinki - Gladysz, Kornelia; University of Geneva - Ongen, Halit; University of Geneva - Dermitzakis, Emmanouil; Aarhus University Hospital - Bramsen, Jesper; Aarhus University Hospital - Ørntoft, Torben; Aarhus University Hospital - Lindbjerg Andersen, Claus; University of Helsinki - Ristimäki, Ari; Helsinki University Hospital - Lepistö, Anna; Helsinki University Hospital - Renkonen-Sinisalo, Laura; Jyväskylä Central Hospital and University of Eastern Finland - Mecklin, Jukka-Pekka; University of Helsinki, Karolinska Institute - Taipale, Jussi; University of Helsinki - Aaltonen, Lauri
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    Custom code for: "Sequence determinants of human gene regulatory elements"
    (2021-08-04) Sahu, Biswajyoti; Hartonen, Tuomo; Pihlajamaa, Päivi; Wei, Bei; Dave, Kashyap; Zhu, Fangjie; Kaasinen, Eevi; Lidschreiber, Katja; Lidschreiber, Michael; Daub, Carsten O; Cramer, Patrick; Kivioja, Teemu; Taipale, Jussi; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland. Medicum, Faculty of Medicine, University of Helsinki, Helsinki, Finland. - Sahu, Biswajyoti; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland - Hartonen, Tuomo; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland - Pihlajamaa, Päivi; Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden - Wei, Bei; Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden - Dave, Kashyap; Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom - Zhu, Fangjie; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland. Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden - Kaasinen, Eevi; Department of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany. Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden - Lidschreiber, Katja; Department of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany. Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden - Lidschreiber, Michael; Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden. Science for Life Laboratory, Stockholm, Sweden - Daub, Carsten O; Department of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany. Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden - Cramer, Patrick; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland - Kivioja, Teemu; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland. Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden. Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom - Taipale, Jussi
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    Machine learning models, and training, validation and test datasets for: "Sequence determinants of human gene regulatory elements"
    (2021-07-16) Sahu, Biswajyoti; Hartonen, Tuomo; Pihlajamaa, Päivi; Wei, Bei; Dave, Kashyap; Zhu, Fangjie; Kaasinen, Eevi; Lidschreiber, Katja; Lidschreiber, Michael; Daub, Carsten O; Cramer, Patrick; Kivioja, Teemu; Taipale, Jussi; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland. Medicum, Faculty of Medicine, University of Helsinki, Helsinki, Finland. - Sahu, Biswajyoti; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland - Hartonen, Tuomo; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland - Pihlajamaa, Päivi; Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden - Wei, Bei; Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden - Dave, Kashyap; Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom - Zhu, Fangjie; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland. Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden. - Kaasinen, Eevi; Department of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany. Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden - Lidschreiber, Katja; Department of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany. Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden - Lidschreiber, Michael; Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden. Science for Life Laboratory, Stockholm, Sweden - Daub, Carsten O; Department of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany. Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden - Cramer, Patrick; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland - Kivioja, Teemu; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland. Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden. Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom - Taipale, Jussi