• 45,671 Escherichia coli genomes
    (2024-12-05) Mäklin, Tommi; University of Helsinki - Mäklin, Tommi
  • Batch job scripts for analysing CLED plate sweeps from a study in Punjab, Pakistan
    (2023-11-07) Mäklin, Tommi; University of Helsinki - Mäklin, Tommi
  • BBS phase 1 & phase 2 high quality E. coli bin assembled genomes
    (2024-11-07) Mäklin, Tommi; Gladstone, Rebecca; Shao, Yan; Wellcome Sanger Institute; University of Helsinki - Mäklin, Tommi; University of Oslo - Gladstone, Rebecca; Wellcome Sanger Institute - Shao, Yan
  • Bin-assembled Escherichia coli genomes from a study in Punjab, Pakistan
    (2024-06-25) Mäklin, Tommi; Khawaja, Tamim; University of Helsinki - Mäklin, Tommi; Helsinki University Hospital - Khawaja, Tamim
  • Data from an investigation into colibactin-producing Escherichia coli endemicity globally
    (2024-12-05) Mäklin, Tommi; Taira, Aurora; Arredondo-Alonso, Sergio; Shao, Yan; Stratton, Michael; Lawley, Trevor; Aaltonen, Lauri; Corander, Jukka; University of Helsinki - Mäklin, Tommi; University of Helsinki - Taira, Aurora; University of Oslo - Arredondo-Alonso, Sergio; Wellcome Sanger Institute - Shao, Yan; Wellcome Sanger Institute - Stratton, Michael; Wellcome Sanger Institute - Lawley, Trevor; University of Helsinki - Aaltonen, Lauri; University of Oslo - Corander, Jukka; Mäklin, Tommi DataCurator
  • E. coli demix check index
    (2022-06-23) Mäklin, Tommi; University of Helsinki - Mäklin, Tommi
  • Escherichia coli 13k assemblies PopPUNK database
    (2022-03-01) Mäklin, Tommi; Department of Computer Science, University of Helsinki, Finland - Mäklin, Tommi
  • Escherichia coli lineage deconvolution indexes for Themisto, mSWEEP/mGEMS, and demix_check
    (2024-06-25) Mäklin, Tommi; University of Helsinki - Mäklin, Tommi
  • Input data for running a GWAS on penicillin resistance in Streptococcus pneumoniae
    (2023-07-20) Mäklin, Tommi; University of Helsinki, Finland - Mäklin, Tommi
  • Material for the blog post "Building phylogenetic trees with SKA"
    (2023-07-21) Mäklin, Tommi; University of Helsinki, Helsinki - Mäklin, Tommi
  • Metagenome species-level index for Themisto v2.1.0
    (2022-06-17) Mäklin, Tommi; Department of Computer Science, University of Helsinki, Finland - Mäklin, Tommi
  • mGEMS Enterococcus faecalis reference dataset
    (2020-03-23) Mäklin, Tommi; Kallonen, Teemu; Alanko, Jarno; Mäklinen, Veli; Corander, Jukka; Honkela, Antti; University of Helsinki, Helsinki, Finland - Mäklin, Tommi; University of Oslo, Oslo, Norway - Kallonen, Teemu; University of Helsinki, Helsinki, Finland - Alanko, Jarno; University of Helsinki, Helsinki, Finland - Mäklinen, Veli; University of Oslo, Oslo, Norway - Corander, Jukka; University of Helsinki, Helsinki, Finland - Honkela, Antti
  • mGEMS Escherichia coli in vitro experiment hybrid assemblies
    (2021-05-05) Mäklin, Tommi; Kallonen, Teemu; Alanko, Jarno; Samuelsen, Ørjan; Hegstad, Kristin; Mäklinen, Veli; Corander, Jukka; Heinz, Eva; Honkela, Antti; University of Helsinki, Helsinki, Finland - Mäklin, Tommi; University of Oslo, Oslo, Norway - Kallonen, Teemu; University of Helsinki, Helsinki, Finland - Alanko, Jarno; Norwegian National Advisory Unit on Detection of Antimicrobial Resistance, Department of Microbiology and Infection Control, University Hospital of North Norway, Tromsø, Norway - Samuelsen, Ørjan; Norwegian National Advisory Unit on Detection of Antimicrobial Resistance, Department of Microbiology and Infection Control, University Hospital of North Norway, Tromsø, Norway - Hegstad, Kristin; University of Helsinki, Helsinki, Finland - Mäklinen, Veli; University of Oslo, Oslo, Norway - Corander, Jukka; Liverpool School of Tropical Medicine, Liverpool, United Kingdom - Heinz, Eva; University of Helsinki, Helsinki, Finland - Honkela, Antti
  • mGEMS Escherichia coli nanopore reads for in vitro experiment hybrid assemblies
    (2021-05-05) Mäklin, Tommi; Kallonen, Teemu; Alanko, Jarno; Samuelsen, Ørjan; Hegstad, Kristin; Mäklinen, Veli; Corander, Jukka; Heinz, Eva; Honkela, Antti; University of Helsinki, Helsinki, Finland - Mäklin, Tommi; University of Oslo, Oslo, Norway - Kallonen, Teemu; University of Helsinki, Helsinki, Finland - Alanko, Jarno; Norwegian National Advisory Unit on Detection of Antimicrobial Resistance, Department of Microbiology and Infection Control, University Hospital of North Norway, Tromsø, Norway - Samuelsen, Ørjan; Norwegian National Advisory Unit on Detection of Antimicrobial Resistance, Department of Microbiology and Infection Control, University Hospital of North Norway, Tromsø, Norway - Hegstad, Kristin; University of Helsinki, Helsinki, Finland - Mäklinen, Veli; University of Oslo, Oslo, Norway - Corander, Jukka; Liverpool School of Tropical Medicine, Liverpool, United Kingdom - Heinz, Eva; University of Helsinki, Helsinki, Finland - Honkela, Antti
  • mGEMS Escherichia coli reference dataset
    (2021-05-05) Mäklin, Tommi; Kallonen, Teemu; Alanko, Jarno; Mäklinen, Veli; Corander, Jukka; Honkela, Antti; University of Helsinki, Helsinki, Finland - Mäklin, Tommi; University of Oslo, Oslo, Norway - Kallonen, Teemu; University of Helsinki, Helsinki, Finland - Alanko, Jarno; University of Helsinki, Helsinki, Finland - Mäklinen, Veli; University of Oslo, Oslo, Norway - Corander, Jukka; University of Helsinki, Helsinki, Finland - Honkela, Antti
  • mGEMS Staphylococcus aureus reference dataset
    (2020-03-23) Mäklin, Tommi; Kallonen, Teemu; Alanko, Jarno; Mäklinen, Veli; Corander, Jukka; Honkela, Antti; University of Helsinki, Helsinki, Finland - Mäklin, Tommi; University of Oslo, Oslo, Norway - Kallonen, Teemu; University of Helsinki, Helsinki, Finland - Alanko, Jarno; University of Helsinki, Helsinki, Finland - Mäklinen, Veli; University of Oslo, Oslo, Norway - Corander, Jukka; University of Helsinki, Helsinki, Finland - Honkela, Antti
  • mGEMS synthetic mixed samples (Supplementary Table)
    (2020-03-23) Mäklin, Tommi; Kallonen, Teemu; Alanko, Jarno; Mäklinen, Veli; Corander, Jukka; Honkela, Antti; University of Helsinki, Helsinki, Finland - Mäklin, Tommi; University of Oslo, Oslo, Norway - Kallonen, Teemu; University of Helsinki, Helsinki, Finland - Alanko, Jarno; University of Helsinki, Helsinki, Finland - Mäklinen, Veli; University of Oslo, Oslo, Norway - Corander, Jukka; University of Helsinki, Helsinki, Finland - Honkela, Antti
  • mSWEEP v1 example dataset
    (2023-06-30) Mäklin, Tommi; University of Helsinki - Mäklin, Tommi
  • mSWEEP/mGEMS E. coli reference database
    (2022-06-17) Mäklin, Tommi; Department of Computer Science, University of Helsinki, Finland - Mäklin, Tommi
  • mSWEEP/mGEMS E. faecalis reference database
    (2022-06-17) Mäklin, Tommi; Pöntinen, Anna K; Department of Computer Science, University of Helsinki, Finland - Mäklin, Tommi; Norwegian National Advisory Unit on Detection of Antimicrobial Resistance, Department of Microbiology and Infection Control, University Hospital of North Norway, Tromsø, Norway - Pöntinen, Anna K


: