- Custom code for: "Sequence determinants of human gene regulatory elements"(2021-08-04) Sahu, Biswajyoti; Hartonen, Tuomo; Pihlajamaa, Päivi; Wei, Bei; Dave, Kashyap; Zhu, Fangjie; Kaasinen, Eevi; Lidschreiber, Katja; Lidschreiber, Michael; Daub, Carsten O; Cramer, Patrick; Kivioja, Teemu; Taipale, Jussi; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland. Medicum, Faculty of Medicine, University of Helsinki, Helsinki, Finland. - Sahu, Biswajyoti; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland - Hartonen, Tuomo; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland - Pihlajamaa, Päivi; Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden - Wei, Bei; Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden - Dave, Kashyap; Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom - Zhu, Fangjie; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland. Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden - Kaasinen, Eevi; Department of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany. Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden - Lidschreiber, Katja; Department of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany. Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden - Lidschreiber, Michael; Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden. Science for Life Laboratory, Stockholm, Sweden - Daub, Carsten O; Department of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany. Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden - Cramer, Patrick; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland - Kivioja, Teemu; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland. Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden. Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom - Taipale, Jussi
- Image-based & machine learning-guided multiplexed serology test for SARS-CoV-2(2022-03-14) Pietiäinen, Vilja; Polso, Minttu; Migh, Ede; Guckelsberger, Christian; Harmati, Maria; Diosdi, Akos; Turunen, Laura; Hassinen, Antti; Potdar, Swapnil; Koponen, Annika; Sebestyen, Edina Guykity; Kovacs, Ferenc; Kriston, Andras; Hollandi, Reka; Burian, Katalin; Terhes, Gabriella; Visnyovszki, Adam; Fodor, Eszter; Lacza, Zsombor; Kantele, Anu; Kolehmainen, Pekka; Kakkola, Laura; Strandin, Tomas; Levanov, Lev; Kallioniemi, Olli; Kemeny, Lajos; Julkunen, Ilkka; Vapalahti, Olli; Buzas, Krisztina; Paavolainen, Lassi; Horvath, Peter; Hepojoki, Jussi; Institute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Sciences (HiLIFE), University of Helsinki - Pietiäinen, Vilja; Institute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Sciences (HiLIFE), University of Helsinki - Polso, Minttu; Laboratory of Microscopic Image Analysis and Machine Learning, Institute of Biochemistry, Biological Research Centre - Migh, Ede; Institute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Sciences (HiLIFE), University of Helsinki; Department of Computer Science, Aalto University; Finnish Center for Artificial Intelligence; School of Electronic Engineering and Computer Science, Queen Mary University of London - Guckelsberger, Christian; Laboratory of Microscopic Image Analysis and Machine Learning, Institute of Biochemistry, Biological Research Centre - Harmati, Maria; Laboratory of Microscopic Image Analysis and Machine Learning, Institute of Biochemistry, Biological Research Centre - Diosdi, Akos; Institute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Sciences (HiLIFE), University of Helsinki - Turunen, Laura; Institute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Sciences (HiLIFE), University of Helsinki - Hassinen, Antti; Institute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Sciences (HiLIFE), University of Helsinki - Potdar, Swapnil; Minerva Foundation Institute for Medical Research; Department of Anatomy, Faculty of Medicine, University of Helsinki - Koponen, Annika; Laboratory of Microscopic Image Analysis and Machine Learning, Institute of Biochemistry, Biological Research Centre - Sebestyen, Edina Guykity; Laboratory of Microscopic Image Analysis and Machine Learning, Institute of Biochemistry, Biological Research Centre; Single-Cell Technologies Ltd. - Kovacs, Ferenc; Laboratory of Microscopic Image Analysis and Machine Learning, Institute of Biochemistry, Biological Research Centre; Single-Cell Technologies Ltd. - Kriston, Andras; Laboratory of Microscopic Image Analysis and Machine Learning, Institute of Biochemistry, Biological Research Centre - Hollandi, Reka; Department of Medical Microbiology, Faculty of Medicine, University of Szeged - Burian, Katalin; Department of Medical Microbiology, Faculty of Medicine, University of Szeged - Terhes, Gabriella; 1st Department of Internal Medicine, Faculty of Medicine, University of Szeged - Visnyovszki, Adam; Department of Sports Physiology, Inst. Sports and Health Sciences, University of Physical Education - Fodor, Eszter; Department of Sports Physiology, Inst. Sports and Health Sciences, University of Physical Education - Lacza, Zsombor; Meilahti Infectious Diseases and Vaccine Research Center, MeiVac, University of Helsinki and Helsinki University Hospital; Human Microbiome Research Program, University of Helsinki - Kantele, Anu; Institute of Biomedicine, University of Turku - Kolehmainen, Pekka; Institute of Biomedicine, University of Turku - Kakkola, Laura; Department of Virology, Medicum, University of Helsinki - Strandin, Tomas; Department of Virology, Medicum, University of Helsinki - Levanov, Lev; Institute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Sciences (HiLIFE), University of Helsinki; Department of Oncology-Pathology, Karolinska Institutet, Science for Life Laboratory - Kallioniemi, Olli; HCEMM-USZ Skin Research Group, Department of Dermatology and Allergology, University of Szeged - Kemeny, Lajos; Institute of Biomedicine, University of Turku; Turku University Hospital - Julkunen, Ilkka; Department of Virology, Medicum, University of Helsinki; Department of Veterinary Biosciences, University of Helsinki; HUS Diagnostic Center, HUSLAB, Clinical Microbiology, Helsinki University Hospital - Vapalahti, Olli; Department of Immunology, Faculty of Medicine, Faculty of Science and Informatics, University of Szeged - Buzas, Krisztina; Institute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Sciences (HiLIFE), University of Helsinki - Paavolainen, Lassi; Institute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Sciences (HiLIFE), University of Helsinki; Laboratory of Microscopic Image Analysis and Machine Learning, Institute of Biochemistry, Biological Research Centre; Single-Cell Technologies Ltd. - Horvath, Peter; Department of Virology, Medicum, University of Helsinki; University of Zurich, Vetsuisse Faculty, Institute of Veterinary Pathology - Hepojoki, Jussi
- Machine learning models, and training, validation and test datasets for: "Sequence determinants of human gene regulatory elements"(2021-07-16) Sahu, Biswajyoti; Hartonen, Tuomo; Pihlajamaa, Päivi; Wei, Bei; Dave, Kashyap; Zhu, Fangjie; Kaasinen, Eevi; Lidschreiber, Katja; Lidschreiber, Michael; Daub, Carsten O; Cramer, Patrick; Kivioja, Teemu; Taipale, Jussi; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland. Medicum, Faculty of Medicine, University of Helsinki, Helsinki, Finland. - Sahu, Biswajyoti; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland - Hartonen, Tuomo; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland - Pihlajamaa, Päivi; Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden - Wei, Bei; Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden - Dave, Kashyap; Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom - Zhu, Fangjie; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland. Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden. - Kaasinen, Eevi; Department of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany. Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden - Lidschreiber, Katja; Department of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany. Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden - Lidschreiber, Michael; Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden. Science for Life Laboratory, Stockholm, Sweden - Daub, Carsten O; Department of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany. Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden - Cramer, Patrick; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland - Kivioja, Teemu; Applied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland. Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden. Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom - Taipale, Jussi