Cast Away in the Adriatic: Low Degree of Parallel Genetic Differentiation in Three-Spined Sticklebacks
2021-11-07, 2021-11-07
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This repository incorporates data and scripts associated with the paper "Cast Away in the Adriatic: Low Degree of Parallel Genetic Divergence in Three-Spined Sticklebacks".
Included in the repository are the following compressed folders:
Moments_models&data.zip: two-population demographic models and SFS to run in moments.
Stairwayplot.zip: blueprint files for multiple mutation rates and results for StairwayPlots.
TreeMix.zip: pipeline to infer population splits and mixture events from allele frequency data using TreeMix, including input files.
VCF.zip: a filtered VCF file for all three-spined stickleback samples.
The scripts for TreeMix and demographic analyses in moments are also available on GitHub.