other-openGrigorjew, AndreasGynter, ArturDias, Fernando H. C.Buchfink, BenjaminDrost, Hajk-GeorgTomescu, Alexandru I2025-03-242023-04-052023-04-05https://hydatakatalogi-test-24.it.helsinki.fi/handle/123456789/10061EMERALD is a command line protein sequence aligner that explores the suboptimal space and calculates \(\alpha\)-safety windows: partial alignments that are contained in an proportion of all suboptimal alignments. EMERALD takes FASTA cluster files and aligns one selected representative sequence to all the other sequences.Openprotein-structure sequence-alignmentsoftware